PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0540s0012.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 187aa    MW: 20335.8 Da    PI: 5.9364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0540s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-183279253
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++aa+  l
  Kalax.0540s0012.1.p 32 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDAAAMWL 79
                         69****998.**********843...6*********************9755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-213290IPR016177DNA-binding domain
SMARTSM003806.1E-343295IPR001471AP2/ERF domain
PfamPF008474.8E-123279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-313290IPR001471AP2/ERF domain
PROSITE profilePS5103222.553289IPR001471AP2/ERF domain
CDDcd000183.07E-203391No hitNo description
PRINTSPR003676.4E-103344IPR001471AP2/ERF domain
PRINTSPR003676.4E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSDSSMSDSS SSAELKAHPR KHPKQSSAKH PTYRGVRMRN WGKWVSEIRE PRKKSRIWLG  60
TFPSPEMAAR AHDAAAMWLK GASATLNFPE LAGLLPRPES SSPRDVQAAA AKAAAMDWET  120
GKHQDEQLGD IVELPSLDEF GNGCGGSWSH APPWLVSVED YGDQMIPVVA DEQSCGGCFE  180
GLLWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152889163ATERF1
3gcc_A2e-152889163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291182.11e-52PREDICTED: dehydration-responsive element-binding protein 3-like
RefseqXP_013462028.15e-53AP2 domain class transcription factor
SwissprotQ391271e-50TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLB7FI905e-53B7FI90_MEDTR; Uncharacterized protein
STRINGVIT_04s0008g03400.t012e-51(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-40ERF family protein